BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB006B03LP1|AL425472
(308 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig917 229 3e-60
3x_Contig474 197 9e-51
>3x_Contig917
Length = 3433
Score = 229 bits (109), Expect = 3e-60
Identities = 123/127 (96%), Gaps = 1/127 (0%)
Strand = Plus / Minus
Query: 1 cgcattacgcakggtcaattataatggactcgatgccgtag-ttcacaccatttgaagct 59
||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 133 cgcattacgcagtggcaattataatggactcgatgccgtaggttcacaccatttgaagct 74
Query: 60 catcgtttcggcgaagattggggtgttctcccttaaatgaaggctaatctcagaaagaag 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 catcgtttcggcgaagattggggtgttctcccttaaatgaaggctaatctcagaaagaag 14
Query: 120 gtaactg 126
|||||||
Sbjct: 13 gtaactg 7
>3x_Contig474
Length = 1209
Score = 197 bits (94), Expect = 9e-51
Identities = 96/98 (97%)
Strand = Plus / Minus
Query: 201 tcttkacgtgtctcttcmtattcggcataatcctgtttcggtatgtcccgttggttcctg 260
|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1209 tcttgacgtgtctcttcatattcggcataatcctgtttcggtatgtcccgttggttcctg 1150
Query: 261 tagttttctactgccaaatttcgttcgagggatattct 298
||||||||||||||||||||||||||||||||||||||
Sbjct: 1149 tagttttctactgccaaatttcgttcgagggatattct 1112
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.46 0.723 1.37
Gapped
Lambda K H
1.46 0.723 1.37
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 948
Number of Sequences: 1807
Number of extensions: 948
Number of successful extensions: 68
Number of sequences better than 1.0e-20: 2
length of query: 308
length of database: 10,358,551
effective HSP length: 15
effective length of query: 293
effective length of database: 10,331,446
effective search space: 3027113678
effective search space used: 3027113678
T: 0
A: 40
X1: 5 (10.5 bits)
X2: 14 (29.4 bits)
S1: 11 (23.6 bits)
S2: 47 (99.1 bits)